Closed monique2208 closed 2 months ago
No response
v3.1.0
apptainer run --no-mount bind-paths --cleanenv --bindds003717:/bids /home/mdenissen/containers/bidspm_current.sif /bids /bids dataset --action stats --task SESS06 --model /bids/derivatives/models/model-defaultSESS06_smdl.json --preproc_dir /bids/derivatives/bidspm-preproc --space MNI152NLin2009cAsym --skip_validation
Run dataset level from command line
There are no errors, but I am still running subject level:
bidspm('/bids', ... '/bids', ... 'subject', ... 'action', 'stats', ... 'verbosity', 2, ... 'space', { 'MNI152NLin2009cAsym' }, ... 'fwhm', 6.0, ... 'skip_validation', true, ... 'preproc_dir', '/bids/derivatives/bidspm-preproc', ... 'model_file', '/bids/derivatives/models/model-defaultSESS06_smdl.json');
The command seems ignored explicitly, only the default model action takes the dataset level into account.
https://github.com/cpp-lln-lab/bidspm/blob/a8a61d6a730b0519d14b6fc53da1114b30b64c71/src/bidspm.py#L226
Is this intentional?
Thank you for your issue. Give us a little time to review it.
PS. You might want to check the FAQ if you haven't done so already.
This is an automated reply, generated by FAQtory
Is there an existing issue for this?
Operating system
Operating system version
No response
SPM 12 version
Platform
Platform version
No response
bidspm version
v3.1.0
bidspm branch / commit number
Expected Behavior
Run dataset level from command line
BIDS stats model
No response
Current Behavior & Error message
There are no errors, but I am still running subject level:
Anything else?
The command seems ignored explicitly, only the default model action takes the dataset level into account.
https://github.com/cpp-lln-lab/bidspm/blob/a8a61d6a730b0519d14b6fc53da1114b30b64c71/src/bidspm.py#L226
Is this intentional?