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cpreid2 / gdc-rnaseq-tool

Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
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More descriptions in README #1

Closed gaheens closed 6 years ago

gaheens commented 6 years ago

The tool works good! Just recommend more descriptions in the README. For example:

1) The README has the bulleted list of RNA-Seq and miRNA Expression Quantification. Recommend creating a section on Inputs and a section on Outputs and merging the bulleted list into the Inputs section with more descriptions. The Outputs section could have a description of Merged_Counts, Merged_FPKM, Merged_FPKM-UQ, Merged_miRNA_Counts, Merged_miRNA_rpmm 2) In the quick start, add a step to download the gdc-rnaseq-tool. I understand this should be intuitive but it is a step. 3) I am running the tool using Python 3.6 on Windows but do not specify "python3" as the executable is just "python".

cpreid2 commented 6 years ago

@gaheens Thanks for the great feedback! I've updated the readme with your suggestions.