The tool works good! Just recommend more descriptions in the README. For example:
1) The README has the bulleted list of RNA-Seq and miRNA Expression Quantification. Recommend creating a section on Inputs and a section on Outputs and merging the bulleted list into the Inputs section with more descriptions. The Outputs section could have a description of Merged_Counts, Merged_FPKM, Merged_FPKM-UQ, Merged_miRNA_Counts, Merged_miRNA_rpmm
2) In the quick start, add a step to download the gdc-rnaseq-tool. I understand this should be intuitive but it is a step.
3) I am running the tool using Python 3.6 on Windows but do not specify "python3" as the executable is just "python".
The tool works good! Just recommend more descriptions in the README. For example:
1) The README has the bulleted list of RNA-Seq and miRNA Expression Quantification. Recommend creating a section on Inputs and a section on Outputs and merging the bulleted list into the Inputs section with more descriptions. The Outputs section could have a description of Merged_Counts, Merged_FPKM, Merged_FPKM-UQ, Merged_miRNA_Counts, Merged_miRNA_rpmm 2) In the quick start, add a step to download the gdc-rnaseq-tool. I understand this should be intuitive but it is a step. 3) I am running the tool using Python 3.6 on Windows but do not specify "python3" as the executable is just "python".