Closed gaheens closed 6 years ago
@gaheens I have updated the code to resolve this error just a few moments ago. The issue was that I didn't clean up the .gz files that were downloaded from a previous run of the tool. So the key error was from the code looking for files downloaded previously. You shouldn't see this error any longer.
@cpreid2 I downloaded the new version of the code (dated today) but am still seeing this same error, even with the Test manifest.
@gaheens If you delete the RNA-Seq and miRNASeq folders in the same directory as the manifest it should resolve the problem for you.
Though, I just updated the tool to move my fix to another part of the code so that this error shouldn't occur anymore and won't require you (or others ) to delete those folders so that it will work. Try it again with the new code and let me know if it works.
@cpreid2 This worked. Thanks!
Received a KeyError when trying to upload a manifest. Attached is the manifest and error message.
gdc_manifest_20180214_175133.txt
The issue is that I had an extra file reference (VCF) in my manifest that was the wrong file type for this tool and it is also a controlled access file. May want to handle this error condition and display an error message vs. a KeyError.