cpwardell / FiNGS

Filters for Next Generation Sequencing
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Can you use fings on unmatched samples? #2

Closed njbernstein closed 3 years ago

cpwardell commented 3 years ago

It would certainly run, but you would have to be careful with the results, you wouldn't want to filter anything because of a poor-quality unmatched normal sample. I guess it might help clean up regions of poor quality alignment/sequencing. I should really finish adding the tumor-only mode I've been intending to implement.

If you've got a specific use-case or project in mind, feel free to email me and we can discuss it further.