cpwardell / FiNGS

Filters for Next Generation Sequencing
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Cram file support instead of bam #8

Closed Fazulur closed 12 months ago

Fazulur commented 2 years ago

Dear FiNGS team,

Could you please let me know whether FiNGS works with cram files instead of bam. I tried and it didn't report any errors but i have seen some warning messages like below.

[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/6aef897c3d6ff0c78aff06ac189178dd": Protocol not supported

Thanks In Advance Fazulur Rehaman