Refresh IG Group file POST addition & messaging improvements

[echicoine-icf]

This pull request covers the following changes:

• Refresh IG POST expanded to include other resources such as group files.
• Duplicate bundle files during refresh fixed.
• added -x as possible argument during Refresh IG to show expanded reporting for errors, warnings, and information messages.
• • Boolean "verboseMessaging" can be found throughout methods and when true, extra information is appended to output such as cql translation.
• Bundle Test Cases enhanced with multithreading optimizations.
• General enhancements to message output for readability.
• Renamed AbstractResourceProcessor to AbstractBundler.
• • Decoupled MeasureProcessor from AbstractBundler, extends BaseProcessor
• • Created MeasureBundler, extends AbstractBundler
• • Renamed PlanDefinitionProcessor to PlanDefinitionBundler
• • Renamed QuestionnaireProcessor to QuestionnaireBundler
• Improved readability and complexity behind IGBundleProcessor instantiation.
• Adjusted CqlTranslatorException to use List
• -Cql translation results adjusted for output such as:

• Github Issue:
• [ ] I've read the contribution guidelines
• [ ] Code compiles without errors
• [ ] Tests are created / updated
• [ ] Documentation is created / updated

By creating this PR you acknowledge that your contribution will be licensed under Apache 2.0

[echicoine-icf]

Logger is now used over System.out

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 52.98246% with 402 lines in your changes are missing coverage. Please review.

Project coverage is 20.99%. Comparing base (d395b04) to head (69091a7).

:exclamation: Current head 69091a7 differs from pull request most recent head 3999567. Consider uploading reports for the commit 3999567 to get more accurate results

Files	Patch %	Lines
...opencds/cqf/tooling/processor/AbstractBundler.java	58.05%	72 Missing and 27 partials :warning:
...encds/cqf/tooling/processor/TestCaseProcessor.java	46.82%	58 Missing and 9 partials :warning:
...opencds/cqf/tooling/utilities/HttpClientUtils.java	45.00%	63 Missing and 3 partials :warning:
...opencds/cqf/tooling/processor/IGTestProcessor.java	0.00%	54 Missing :warning:
...g/opencds/cqf/tooling/utilities/ResourceUtils.java	62.00%	16 Missing and 3 partials :warning:
.../tooling/cql/exception/CqlTranslatorException.java	0.00%	16 Missing :warning:
...va/org/opencds/cqf/tooling/common/ThreadUtils.java	45.83%	11 Missing and 2 partials :warning:
...f/tooling/processor/PostBundlesInDirProcessor.java	0.00%	12 Missing :warning:
...org/opencds/cqf/tooling/processor/IGProcessor.java	66.66%	9 Missing and 2 partials :warning:
...rg/opencds/cqf/tooling/measure/MeasureBundler.java	75.60%	5 Missing and 5 partials :warning:
... and 10 more

Additional details and impacted files

```diff @@ Coverage Diff @@ ## master #506 +/- ## ============================================ + Coverage 20.85% 20.99% +0.13% - Complexity 1494 1520 +26 ============================================ Files 282 283 +1 Lines 24090 24300 +210 Branches 3832 3867 +35 ============================================ + Hits 5024 5101 +77 - Misses 18221 18351 +130 - Partials 845 848 +3 ```

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