cran-task-views / MixedModels

CRAN Task View: Mixed, Multilevel, and Hierarchical Models in R
https://CRAN.R-project.org/view=MixedModels
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Add nlmixr2 to the list #24

Closed mattfidler closed 1 year ago

mattfidler commented 1 year ago

nlmixr2() is also on CRAN and supports nonlinear mixed effects modeling coupled with ODE solving

mattfidler commented 1 year ago

I thought there were some ODE calculators in the list but I couldn't see them. nlmixr2::nlmixr2() also supports ODE solving

bbolker commented 1 year ago

Did you look under "differential equations"? The only package listed there ATM is mixesde, since nlmeODE was archived in May 2022. Stan can fit ODEs with random-effects parameters, of course, but I don't think there's a front-end for it ...

mattfidler commented 1 year ago

There is stanette and torstan as front ends to ode solving in stan. I can add them too

bbolker commented 1 year ago

Yes please ...

mattfidler commented 1 year ago

Should I mention that nlmixr can run nlme models as a front end

mattfidler commented 1 year ago

Like nlmeode

bbolker commented 1 year ago

might as well, as long as the comment is brief and useful.

mattfidler commented 1 year ago

stanette was removed from CRAN. torstan hasn't made it to CRAN yet, so I will refrain for now.

bbolker commented 1 year ago

We were thinking about adding a "packages to watch" document (like these examples, packages that had been archived but could return or packages under development/not yet on CRAN), to check periodically ... (I think I'll add a separate issue for this).

mattfidler commented 1 year ago

I guess nlmixr2 also supports gaussian censored nonlinear mixed too

mattfidler commented 1 year ago

Thanks @bbolker