bulk RNA-seq input: counts or tpm?

cran / BisqueRNA

:exclamation: This is a read-only mirror of the CRAN R package repository. BisqueRNA — Decomposition of Bulk Expression with Single-Cell Sequencing. Homepage: https://www.biorxiv.org/content/10.1101/669911v1 Report bugs for this package: https://github.com/cozygene/bisque/issues

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bulk RNA-seq input: counts or tpm? #3

Open yelly-zhou opened 2 weeks ago

yelly-zhou commented 2 weeks ago

Hello, thank you for providing such a convenient method, I would like to know if the input bulk transcriptome data must be count? Can I use tpm as input? thanks

gaborcsardi commented 2 weeks ago

Hi, this is a read only mirror of CRAN, please see the package authors in the DESCRIPTION file. Look for Maintainer, BugReports and URL. Thanks!