Hello,
I am trying to load .fsa files using storing.inds command and get the following error.
muskrats <- storing.inds("D:/abd/xyz/genotyping/rerun")[1] "Reading FSA files" | | 0% Error in matrix(unlist(reads), ncol = channels) : 'data' must be of a vector type, was 'NULL'In addition: Warning messages: 1: In read.abif(listp2[i]) : unimplemented legacy type found in file2: In read.abif(listp2[i]) : unimplemented legacy type found in file3: In aaa == channels : longer object length is not a multiple of shorter object length4: In unlist(lens) == real.len : longer object length is not a multiple of shorter object length5: In 1:channels : numerical expression has 12 elements: only the first used
For background information:
I am running R v 3.3.0 (not sure if that is the issue as Fragman was built on 3.3.2)
sessionInfo()R version 3.3.0 (2016-05-03)Platform: x86_64-w64-mingw32/x64 (64-bit)Running under: Windows >= 8 x64 (build 9200) `locale:` `[1] LC_COLLATE=English_United States.1252 ` `[2] LC_CTYPE=English_United States.1252 ` `[3] LC_MONETARY=English_United States.1252` `[4] LC_NUMERIC=C ` `[5] LC_TIME=English_United States.1252 ` attached base packages:[1] stats graphics grDevices utils datasets[6] methods base `other attached packages:` `[1] Fragman_1.0.7` loaded via a namespace (and not attached):[1] tools_3.3.0
Do you have any suggestions as to what might be going wrong?
hdesale2408
commented
3 years ago
Hello, I am trying to load .fsa files using storing.inds command and get the following error.
muskrats <- storing.inds("D:/abd/xyz/genotyping/rerun")[1] "Reading FSA files" | | 0% Error in matrix(unlist(reads), ncol = channels) : 'data' must be of a vector type, was 'NULL'In addition: Warning messages: 1: In read.abif(listp2[i]) : unimplemented legacy type found in file2: In read.abif(listp2[i]) : unimplemented legacy type found in file3: In aaa == channels : longer object length is not a multiple of shorter object length4: In unlist(lens) == real.len : longer object length is not a multiple of shorter object length5: In 1:channels : numerical expression has 12 elements: only the first usedFor background information: I am running R v 3.3.0 (not sure if that is the issue as Fragman was built on 3.3.2)
sessionInfo()R version 3.3.0 (2016-05-03)Platform: x86_64-w64-mingw32/x64 (64-bit)Running under: Windows >= 8 x64 (build 9200)`locale:` `[1] LC_COLLATE=English_United States.1252 ` `[2] LC_CTYPE=English_United States.1252 ` `[3] LC_MONETARY=English_United States.1252` `[4] LC_NUMERIC=C ` `[5] LC_TIME=English_United States.1252 `attached base packages:[1] stats graphics grDevices utils datasets[6] methods base`other attached packages:` `[1] Fragman_1.0.7`loaded via a namespace (and not attached):[1] tools_3.3.0Do you have any suggestions as to what might be going wrong?
Amruta