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cran / LinkageMapView

:exclamation: This is a read-only mirror of the CRAN R package repository. LinkageMapView — Plot Linkage Group Maps with Quantitative Trait Loci. Homepage: https://github.com/louellette/LinkageMapView Report bugs for this package: https://github.com/louellette/LinkageMapView/issues
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Linkage Map Producing Duplicate Colored Region #1

Open wkmustahs21 opened 2 years ago

wkmustahs21 commented 2 years ago

Hi While testing out LinkageMapView, I notice an issue or bug when trying to map out 2 chromosomes on one pdf. This is my code from today:

`data = CSR1 chr = c("2A", "2A", "4A.2", "4A.2") ##IT s = c(146.93, 68.51 ) e = c(149.78, 79.28 ) col = c("darkorchid") sectcoldf <- data.frame(chr, s, e, col,stringsAsFactors = FALSE) flist <- list() locus <- c("S2A_646416484", "S2A_626218088", "S4A_682313475", "S4A_671836181") col <- c("red") font <- c(4) flist[[1]] <- list(locus=locus,col=col, font=font)

outfile = file.path("ML-KPS-CSV3--1.pdf") lmv.linkage.plot(CSR1,outfile,mapthese=c( "2A", "4A.2"), ruler=TRUE,maxnbrcolsfordups = 1, sectcoldf=sectcoldf ,markerformatlist=flist, font.axis = 4) `

Here is the output from this code... I can't seem to track down the issue. ML-KPS-CSV3--1.pdf

gaborcsardi commented 2 years ago

Hi, this is a read only mirror of CRAN, please see the package authors in the DESCRIPTION file. Look for Maintainer, BugReports and URL. Thanks!