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cran / Rtapas

:exclamation: This is a read-only mirror of the CRAN R package repository. Rtapas — Random Tanglegram Partitions
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Question about the data requirement for max_cong() #1

Open JoshuaThieriot opened 1 year ago

JoshuaThieriot commented 1 year ago

Dear developers, I am running the rTapas package to calculate the co-phylogeny of 2 NJ trees. I have prepared my input association matrix and phylogeny as the example datasets but I got the error and warning messages when I run the max_cong(): Error in tapply(X = X, INDEX = x, FUN = FUN, ...) : argument "X" is missing, with no default In addition: Warning messages: 1: In trimHS_maxC(N = N, n = n, HS = HS, check.unique = TRUE) : No. of trimmed H-S assoc. matrices < No. of runs 2: In drop.tip.phylo(treeH, setdiff(treeH$tip.label, rownames(ths))) : drop all tips of the tree: returning NULL 3: In drop.tip.phylo(treeS, setdiff(treeS$tip.label, colnames(ths))) : drop all tips of the tree: returning NULL

My datasets are screenshots below: image image image

It would be very kind of you if you could offer me some guidance on how to solve these problems. Thank you!

gaborcsardi commented 1 year ago

Hi, this is a read only mirror of CRAN, please see the package authors in the DESCRIPTION file. Look for Maintainer, BugReports and URL. Thanks!

JoshuaThieriot commented 1 year ago

Thank you! I will check these out