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cran / WorldFlora

:exclamation: This is a read-only mirror of the CRAN R package repository. WorldFlora — Standardize Plant Names According to World Flora Online Taxonomic Backbone
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exclude.infraspecific = TRUE error #4

Closed msedaghatpour closed 11 months ago

msedaghatpour commented 11 months ago

exclude.infraspecific = TRUE from WFO.match() is returning the error: Error in if (WFO.out[i, "verbatimTaxonRank"] %in% infraspecific.excluded) { : argument is of length zero

Here is my code:

WCVP <- fread(paste0( "~/Desktop/update_flora_final/data/wcvp_20230410/wcvp_names.csv"), encoding="UTF-8")

WCVP.data <- new.backbone(WCVP, taxonID="plant_name_id", scientificName="taxon_name", scientificNameAuthorship="taxon_authors", acceptedNameUsageID = "accepted_plant_name_id", taxonomicStatus = "taxon_status")

WFO_WCVP_output <- WFO.match( spec.data = infra, WFO.data = WCVP.data, exclude.infraspecific = TRUE, counter = 1)

My goal is to get the authorities for a list of accepted species rank names WCVP can be downloaded from https://powo.science.kew.org

gaborcsardi commented 11 months ago

Hi, this is a read only mirror of CRAN, please see the package authors in the DESCRIPTION file. Look for Maintainer, BugReports and URL. Thanks!