Open tuttigiuperterra opened 2 years ago
I'm trying to use the profile_AA_x0 function of the R package 'Genogeographer'. It has the following usage description:
Usage
profile_AA_x0 (AA_profile, df, select = c("locus", "x0"), keep_dropped = FALSE)
Arguments
_AAprofile: A tibble/data.frame with columns 'locus', 'A1' and 'A2' holding the separated version of a genotype, eg. AG -> A1: A, A2: G
df: The database with main alleles per locus
select: Which columns to return
_keepdropped : Logical. Keep the non-matching alleles (compared to 'db') and those with genotype 'NN'
How does a "database with main alleles per locus" look like? I do not understand what should I put in the variable df.
Thank you
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I'm trying to use the profile_AA_x0 function of the R package 'Genogeographer'. It has the following usage description:
Usage
profile_AA_x0 (AA_profile, df, select = c("locus", "x0"), keep_dropped = FALSE)
Arguments
_AAprofile: A tibble/data.frame with columns 'locus', 'A1' and 'A2' holding the separated version of a genotype, eg. AG -> A1: A, A2: G
df: The database with main alleles per locus
select: Which columns to return
_keepdropped : Logical. Keep the non-matching alleles (compared to 'db') and those with genotype 'NN'
How does a "database with main alleles per locus" look like? I do not understand what should I put in the variable df.
Thank you