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cran / netgwas

:exclamation: This is a read-only mirror of the CRAN R package repository. netgwas — Network-Based Genome Wide Association Studies
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Plot a netmap object - display only the network #1

Open lydiapurple opened 1 year ago

lydiapurple commented 1 year ago

If I plot a netmap, I get 3 plots - the network itself, then before and after ordering markers. However, I would like to display only the network itself and do not find the option. Also, when adding labels, the often overlap each other. Is there an option to avoid this overlapping?

Here's the code I use to generate the plots:

library(netgwas)
data(CviCol)
cvicol <- CviCol[ ,sample(1:ncol(CviCol), ncol(CviCol), replace=FALSE)]
cvicol<-as.data.frame(cvicol)
rm(CviCol)
out <- netmap(cvicol, cross= "outbred", ncores=1); out
map <- out$map; map
plot(out)

In red I circled the plot I want to display without the others. How can this be done?

Unbenannt
gaborcsardi commented 1 year ago

Hi, this is a read only mirror of CRAN, please see the package authors in the DESCRIPTION file. Look for Maintainer, BugReports and URL. Thanks!

lydiapurple commented 1 year ago

Hi, thanks, I tried to contact the author also several times by mail, but no response.