Open thoree opened 1 year ago
Nice and useful library! Apparently Penta D and Penta E are not simulated:
Penta D
Penta E
library(simDNAmixtures) # Essentially first example in sample_mixtures documentation # (changed to n = 1 and added seed = 1729) # remotes::install_github("https://github.com/cran/simDNAmixtures/", force = T) # freqs <- read_allele_freqs(system.file("extdata","FBI_extended_Cauc.csv", # package = "simDNAmixtures")) #problem with reprex freqs <- read_allele_freqs("C:/Rlibrary/simDNAmixtures/extdata/FBI_extended_Cauc.csv") data(gf) sampling_parameters <- list(min_mu = 50., max_mu = 5e3, min_cv = 0.05, max_cv = 0.35, degradation_shape1 = 10, degradation_shape2 = 1) mixtures <- sample_mixtures(n = 1, contributors = c("U1", "U2"), freqs = freqs, sampling_parameters = sampling_parameters, model_settings = gf$gamma_settings_no_stutter, sample_model = sample_gamma_model, seed = 1729) # Markers in in database of frequencies and in mixture markersInDB <- names(freqs) markersInMixture <- unique(mixtures$smash$Marker) setdiff(markersInDB, markersInMixture) #> [1] "Penta E" "Penta D"
Created on 2023-09-18 with reprex v2.0.2
Hi, this is a read only mirror of CRAN, please see the package authors in the DESCRIPTION file. Look for Maintainer, BugReports and URL. Thanks!
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Maintainer
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Nice and useful library! Apparently
Penta D
andPenta E
are not simulated:Created on 2023-09-18 with reprex v2.0.2