Quantify both H/L and L/H and provide option for user to toggle in between

radusuciu commented 8 years ago

I really wish we could avoid this. Because this conversion is done at the cimage level it means two searches for every experiment and it means having duplicate entries in the experiments and dataset tables. It means extra logic when searching through datasets to determine which of the two to show and it will make they yet to be developed analysis feature more annoying to code and to use.

Is there no way around this?

lummyk commented 8 years ago

Rewrite cimage lol.

Weren't Chu's guys already providing this feature in the new cimage?

On Jun 14, 2016, at 11:28 AM, Radu Suciu notifications@github.com<mailto:notifications@github.com> wrote:

I really wish we could avoid this. Because this conversion is done at the cimage level it means two searches for every experiment and it means having duplicate entries in the experiments and dataset tables. It means extra logic when searching through datasets to determine which of the two to show and it will make they yet to be developed analysis feature more annoying to code and to use.

Is there no way around this?

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radusuciu commented 8 years ago

Were they? If that's the case I'd really rather have that code as this would be a pretty annoying thing to change after the fact.

radusuciu commented 8 years ago

Okay, so what I'm going to implement.

Will ask (and store in experiments table) which sample was inhibitor treated: heavy, light, or both
Will run cimage in both modes in parallel and store HL or LH in separate column
Another column will serve as a reference between datasets and hold the
By default, search results will show ratios so that 20 represents maximum inhibition
When viewing a dataset, there will be an option to toggle between H/L and L/H. Unlike toggling grouping, this will just hit the server and get new data.
Sideloaded datasets will not enjoy this unfortunately..

In the future we'll be able to clean up the duplicate datasets I hope.

radusuciu commented 8 years ago

Haven't referenced this in many commits, oops.

cravattlab / cravattdb

Quantify both H/L and L/H and provide option for user to toggle in between #23