The style specified by 'NCBI' does not have a compatible entry for the species Danio rerio

crisprVerse / crisprDesign

Comprehensive design of CRISPR gRNAs for nucleases and base editors

MIT License

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The style specified by 'NCBI' does not have a compatible entry for the species Danio rerio #2

Closed panxiaoguang closed 1 year ago

panxiaoguang commented 1 year ago

when I use TxDb2GRangesList, I met an error called "The style specified by 'NCBI' does not have a compatible entry for the species Danio rerio". Do you know why? I didn't find any code that contains extractSeqlevels

panxiaoguang commented 1 year ago

maybe addSpacerAlignments have a bug, when set the standard_chr_only = FALSE, they still run GenomeInfoDb::keepStandardChromosomes(ls, species = organism, pruning.mode = "fine")