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crisprVerse / crisprDesign

Comprehensive design of CRISPR gRNAs for nucleases and base editors
MIT License
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Support guide efficiency prediction for DjCas13d [feature request] #31

Open abearab opened 5 months ago

abearab commented 5 months ago

It would be nice if crisprVerse can support DjCas13d!

Wei, J., Lotfy, P., Faizi, K., Baungaard, S., Gibson, E., Wang, E., Slabodkin, H., Kinnaman, E., Chandrasekaran, S., Kitano, H., Durrant, M. G., Duffy, C. V., Pawluk, A., Hsu, P. D., & Konermann, S. (2023). Deep learning and CRISPR-Cas13d ortholog discovery for optimized RNA targeting. Cell systems, 14(12), 1087–1102.e13. https://doi.org/10.1016/j.cels.2023.11.006

also see https://github.com/ArcInstitute/RNAtargeting_web_custom

cc @nick-youngblut, @jingyi7777

Jfortin1 commented 5 months ago

@abearab @jingyi7777 @nick-youngblut That shouldn't be too hard -- which version of Python was used to run the code?