Counting randomized barcodes with known flanking sequences.

crisprVerse / screenCounter

Get barcode counts from functional genomics screens

https://bioconductor.org/packages/screenCounter

MIT License

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Counting randomized barcodes with known flanking sequences. #1

Closed j-andrews7 closed 1 year ago

j-andrews7 commented 1 year ago

I've got a use case where we have a screen with random 20bp barcodes - it'd be convenient to ignore the choices parameter and have both the barcodes and corresponding counts returned just based on the flanking sequences.

LTLA commented 1 year ago

Seems reasonable. Should be easily possible but I need to poke through the C++ code to remind myself of what to do.

LTLA commented 1 year ago

Single-end counter added in 97311edaf3614aab1fe6680c8b603772b5727918, see ?countRandomBarcodes for details.

j-andrews7 commented 1 year ago

Perfect, appreciated as always.