cristoichkov / GBS_Bioinf_Process_Mamm

This repository contain the process to treat the reads obtained of GBS. -Clean -standardization parameters in ipyrad -analysis whit optimal parameter
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Maximum-likelihood phylogenetic inference #11

Closed cristoichkov closed 5 years ago

cristoichkov commented 5 years ago

I followed this paper An empirical pipeline for choosing the optimal clustering threshold in RADseq studies. I did 10 runs per parameter, and plot the mean boostrap value per parameter.