search

crs4 / life_monitor

Workflow Sustainability Service
MIT License
4 stars 4 forks source link

Worfklow versions do not seem to get updated in the app #203

Closed wm75 closed 2 years ago

wm75 commented 2 years ago

Example workflows that have more recent workflowhub versions than what's reported as latest version in LifeMonitor:

wfhub: https://workflowhub.eu/workflows/109?version=5 lifemonitor: https://workflowhub.eu/workflows/109?version=3

wfhub: https://workflowhub.eu/workflows/110?version=7 lifemonitor: https://workflowhub.eu/workflows/110?version=6

This is despite the fact that tests have been executed on the more recent versions and that lifemonitor is aware of these executions.

simleo commented 2 years ago

Both in WorkflowHub and in LifeMonitor, a workflow gets updated when the owner submits a new version. However, WorkflowHub runs a daily update routine for all IWC workflows, while we currently don't have that for LifeMonitor. We've started exploring the usage of GitHub apps for this and other tasks, but we're not there yet. We discussed this with @mvdbeek on this in https://github.com/galaxyproject/iwc/pull/53. In the meantime, I've updated all outdated workflows on LifeMonitor:

data-fetching/parallel-accession-download
  WorkflowHub id: 137
sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation
  WorkflowHub id: 138
sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
  WorkflowHub id: 110
sars-cov-2-variant-calling/sars-cov-2-variation-reporting
  WorkflowHub id: 109

Thanks for reporting this!

simleo commented 2 years ago

Forgot to mention: note that, as long as the (URL of the) GitHub Actions workflow that runs the tests does not change between versions, the (scientific) workflow's test status stays up-to-date even if its version isn't.