I am in the process of installing MicrobeAnnotator v2.0.5. During the installation process I ran into the following warning at Step 11 (Processing GenBank files).
/rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176966. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176967. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176968. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176969. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176970. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176971. Is it malformed? BiopythonParserWarning, 2022-04-29 11:55:08,912 [INFO]: Finished
Do think this warning can lead to issues while executing MicrobeAnnotator for annotations?
If you would like I can share the log file generated during installation
Hi,
I am in the process of installing MicrobeAnnotator v2.0.5. During the installation process I ran into the following warning at Step 11 (Processing GenBank files).
/rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176966. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176967. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176968. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176969. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176970. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176971. Is it malformed? BiopythonParserWarning, 2022-04-29 11:55:08,912 [INFO]: Finished
Do think this warning can lead to issues while executing MicrobeAnnotator for annotations?
If you would like I can share the log file generated during installation
Thank you for developing this great tool!