cruizperez / MicrobeAnnotator

Pipeline for metabolic annotation of microbial genomes
Artistic License 2.0
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MicrobeAnnotator Installation Warning #52

Open asbhattacharjee opened 2 years ago

asbhattacharjee commented 2 years ago

Hi,

I am in the process of installing MicrobeAnnotator v2.0.5. During the installation process I ran into the following warning at Step 11 (Processing GenBank files).

/rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176966. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176967. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176968. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176969. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176970. Is it malformed? BiopythonParserWarning, /rhome/anandab/.conda/envs/microbeannotatorV2/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1798: BiopythonParserWarning: Structured comment not parsed for YP_009176971. Is it malformed? BiopythonParserWarning, 2022-04-29 11:55:08,912 [INFO]: Finished

Do think this warning can lead to issues while executing MicrobeAnnotator for annotations?

If you would like I can share the log file generated during installation

Thank you for developing this great tool!

BinhongLiu commented 2 years ago

I received the same warings.

jayramr commented 1 year ago

Hello any update, this can safely ignored??