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cruizperez / MicrobeAnnotator

Pipeline for metabolic annotation of microbial genomes
Artistic License 2.0
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MicrobeAnnotator running error #66

Open 17863952296 opened 1 year ago

17863952296 commented 1 year ago

2022-09-14 14:48:57,256 [INFO]: ---- This is MicrobeAnnotator v2.0.4 ---- 2022-09-14 14:48:57,256 [INFO]: Validating user inputs 2022-09-14 14:48:57,261 [INFO]: Passed 2022-09-14 14:48:57,261 [INFO]: Processing 1 files. I will run 1 files in parallel with 12 threads per file. 2022-09-14 14:48:57,292 [INFO]: Restarting from last checkpoint Traceback (most recent call last): File "/usr/local/bin/microbeannotator", line 981, in main() File "/usr/local/bin/microbeannotator", line 299, in main with open(process_log_folder / "log.txt", 'r') as logfile: FileNotFoundError: [Errno 2] No such file or directory: 'results/process_log/log.txt' how to solve it? please,please,please

bloomarun commented 11 months ago

What was the output folder that you directed microbeannotator to write results? Do you have read/write permissions to that particular folder?

zshivji commented 6 months ago

I am having the same problem (process_log folder is empty) and do have read/write permissions enabled for the folder.