Open jayramr opened 2 years ago
Hi,
Error getting after the 12th
Excecuting the command below microbeannotator_db_builder -d /scratch/jr5241/microbeannotator -m diamond -t 1 --no_aspera --step 12 --keep
2022-09-19 22:52:54,420 [INFO]: Merging annotations into SQLite database. 2022-09-19 22:52:54,424 [INFO]: Creating RefSeq table 2022-09-19 22:53:18,123 [INFO]: Finished 2022-09-19 22:53:18,147 [INFO]: Creating TrEMBL table 2022-09-20 01:34:25,320 [INFO]: Finished 2022-09-20 01:34:25,445 [INFO]: Parsing RefSeq KO numbers 2022-09-20 01:37:48,175 [INFO]: Finished 2022-09-20 01:37:48,175 [INFO]: Creating RefSeq table Traceback (most recent call last): File "/scratch/jr5241/conda-envs/microbeannotar/bin/microbeannotator_db_builder", line 445, in <module> main() File "/scratch/jr5241/conda-envs/microbeannotar/bin/microbeannotator_db_builder", line 437, in main single_step, aspera, keep_temp, bin_path) File "/scratch/jr5241/conda-envs/microbeannotar/bin/microbeannotator_db_builder", line 256, in database_duilder sqlite.create_refseq_table(sql_database, final_refseq_table) File "/scratch/jr5241/conda-envs/microbeannotar/lib/python3.7/site-packages/microbeannotator/database/sqlite3_database_builder.py", line 177, in create_refseq_table records.append((line[0], line[1], line[2], IndexError: list index out of range
Please advise .
@suppakoko could you advise about this error?
Hi,
Error getting after the 12th
Excecuting the command below microbeannotator_db_builder -d /scratch/jr5241/microbeannotator -m diamond -t 1 --no_aspera --step 12 --keep
Please advise .