search

cruizperez / MicrobeAnnotator

Pipeline for metabolic annotation of microbial genomes
Artistic License 2.0
133 stars 27 forks source link

FTP error while downloading database ftplib.error_perm: 550 Failed to change directory. #78

Closed saras224 closed 1 month ago

saras224 commented 1 year ago

Hi @lmrodriguezr @cruizperez I got en error while trying to download Microbeannotator database. 2023-04-03 16:07:38,044 [INFO]: This is MicrobeAnnotator v2.0.5 2023-04-03 16:07:38,044 [INFO]: I will download and format the databases I use. 2023-04-03 16:07:38,044 [INFO]: Creating database folders 2023-04-03 16:07:38,044 [INFO]: Step 13 2023-04-03 16:07:38,045 [INFO]: Creating RefSeq to UniProt table 2023-04-03 16:07:46,276 [INFO]: Finished 2023-04-03 16:07:46,309 [INFO]: Creating KO to EC table 100% [..............................................................................] 50126 / 501262023-04-03 16:07:48,326 [INFO]: Finished 2023-04-03 16:07:48,327 [INFO]: Creating InterPro tables Traceback (most recent call last): File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 2450, in retrfile self.ftp.cwd(file) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/ftplib.py", line 638, in cwd return self.voidcmd(cmd) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/ftplib.py", line 280, in voidcmd return self.voidresp() File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/ftplib.py", line 253, in voidresp resp = self.getresp() File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/ftplib.py", line 248, in getresp raise error_perm(resp) ftplib.error_perm: 550 Failed to change directory.

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 1573, in ftp_open fp, retrlen = fw.retrfile(file, type) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 2452, in retrfile raise URLError('ftp error: %r' % reason) from reason urllib.error.URLError: <urlopen error ftp error: error_perm('550 Failed to change directory.')>

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/rakesh/anaconda3/envs/microbeannotator/bin/microbeannotator_db_builder", line 445, in main() File "/home/rakesh/anaconda3/envs/microbeannotator/bin/microbeannotator_db_builder", line 437, in main single_step, aspera, keep_temp, bin_path) File "/home/rakesh/anaconda3/envs/microbeannotator/bin/microbeannotator_db_builder", line 285, in database_duilder database_directory, interconversion_database) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/site-packages/microbeannotator/database/conversion_database_creator.py", line 156, in create_interpro_tables out=download_output) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/site-packages/wget.py", line 526, in download (tmpfile, headers) = ulib.urlretrieve(binurl, tmpfile, callback) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 247, in urlretrieve with contextlib.closing(urlopen(url, data)) as fp: File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 222, in urlopen return opener.open(url, data, timeout) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 525, in open response = self._open(req, data) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 543, in _open '_open', req) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 503, in _call_chain result = func(*args) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 1584, in ftp_open raise exc.with_traceback(sys.exc_info()[2]) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 1573, in ftp_open fp, retrlen = fw.retrfile(file, type) File "/home/rakesh/anaconda3/envs/microbeannotator/lib/python3.7/urllib/request.py", line 2452, in retrfile raise URLError('ftp error: %r' % reason) from reason urllib.error.URLError: <urlopen error ftp error: URLError("ftp error: error_perm('550 Failed to change directory.')")>

Please help me resolve it! Thanks in Advance!!

sudeep71 commented 1 year ago

Running into the same error? Any way to resolve it? Found solution. (https://github.com/cruizperez/MicrobeAnnotator/issues/63#issuecomment-1229934373)