Open Naturalist1986 opened 11 months ago
Hello,
I've installed the full database version and am trying to run it. I'm getting this error:
(microbeannotator) moshea@shannon:/mnt/LargeStorageNoBackup/Datasets/Moshea/Raw/Roni_Genomes$ microbeannotator -i B1_protein.translations.fasta -d ../MicrobeAnnotator_DB/ -o /mnt/LargeStorageNoBackup/Datasets/Moshea/Raw/Roni_Genomes/ -m diamond -p 1 -t 128 2023-08-16 16:52:32,554 [INFO]: ---- This is MicrobeAnnotator v2.0.4 ---- 2023-08-16 16:52:32,554 [INFO]: Validating user inputs 2023-08-16 16:52:32,554 [INFO]: Passed 2023-08-16 16:52:32,554 [INFO]: Processing 1 files. I will run 1 files in parallel with 128 threads per file. 2023-08-16 16:52:32,562 [INFO]: Searching proteins against KOfam profiles 2023-08-16 16:52:32,562 [INFO]: Parsing HMM profile metadata 2023-08-16 16:52:58,813 [INFO]: Filtering and saving results... Traceback (most recent call last): File "/home/moshea/.conda/envs/microbeannotator/bin/microbeannotator", line 981, in main() File "/home/moshea/.conda/envs/microbeannotator/bin/microbeannotator", line 367, in main processes=processes, threads=threads) File "/home/moshea/.conda/envs/microbeannotator/lib/python3.7/site-packages/microbeannotator/pipeline/hmmsearch.py", line 199, in hmmsearch_launcher write_hmmsearch_results(combined_hmmsearch_results, output_path) File "/home/moshea/.conda/envs/microbeannotator/lib/python3.7/site-packages/microbeannotator/pipeline/hmmsearch.py", line 109, in write_hmmsearch_results f"{record.target.name}\t{record.target.accession}\t" KeyError: 'K26481'
The fasta file was produced with prodigal from a contigs file.
Hello,
I've installed the full database version and am trying to run it. I'm getting this error:
(microbeannotator) moshea@shannon:/mnt/LargeStorageNoBackup/Datasets/Moshea/Raw/Roni_Genomes$ microbeannotator -i B1_protein.translations.fasta -d ../MicrobeAnnotator_DB/ -o /mnt/LargeStorageNoBackup/Datasets/Moshea/Raw/Roni_Genomes/ -m diamond -p 1 -t 128 2023-08-16 16:52:32,554 [INFO]: ---- This is MicrobeAnnotator v2.0.4 ---- 2023-08-16 16:52:32,554 [INFO]: Validating user inputs 2023-08-16 16:52:32,554 [INFO]: Passed 2023-08-16 16:52:32,554 [INFO]: Processing 1 files. I will run 1 files in parallel with 128 threads per file. 2023-08-16 16:52:32,562 [INFO]: Searching proteins against KOfam profiles 2023-08-16 16:52:32,562 [INFO]: Parsing HMM profile metadata 2023-08-16 16:52:58,813 [INFO]: Filtering and saving results... Traceback (most recent call last): File "/home/moshea/.conda/envs/microbeannotator/bin/microbeannotator", line 981, in
main()
File "/home/moshea/.conda/envs/microbeannotator/bin/microbeannotator", line 367, in main
processes=processes, threads=threads)
File "/home/moshea/.conda/envs/microbeannotator/lib/python3.7/site-packages/microbeannotator/pipeline/hmmsearch.py", line 199, in hmmsearch_launcher
write_hmmsearch_results(combined_hmmsearch_results, output_path)
File "/home/moshea/.conda/envs/microbeannotator/lib/python3.7/site-packages/microbeannotator/pipeline/hmmsearch.py", line 109, in write_hmmsearch_results
f"{record.target.name}\t{record.target.accession}\t"
KeyError: 'K26481'
The fasta file was produced with prodigal from a contigs file.