At least three files have Python syntax errors

[cclauss]

$ python3 -m pip install flake8 # https://pypi.org/project/flake8 $ flake8 . --count --select=E9,F63,F7 --show-source --statistics

./avogadro/scripts/find-po-email.py:14:11: E999 SyntaxError: invalid syntax
    print email
          ^
./avogadro/libavogadro/examples/python/proteinextension.py:50:13: E999 SyntaxError: invalid syntax
      print atomId
            ^
./avogadro/libavogadro/src/python/unittest/template.py:9:3: E999 IndentationError: expected an indented block
  def test_test1(self):
  ^
3     E999 SyntaxError: invalid syntax
3

[ghutchis]

This app was released in 2007-2008 and last updated in 2016. It is not Py3 compatible (nor Qt5, Open Babel 3, etc.). It is no longer maintained as indicated in the header of this GitHub repo.

If you would like to help, Avogadro 2 is available at https://github.com/openchemistry/ and there are a variety of Python features, e.g.:

• https://github.com/openchemistry/avogenerators
• https://github.com/OpenChemistry/avogadro-cclib
• https://github.com/OpenChemistry/avogadro-commands

Feel free to stop by and say hello at https://discuss.avogadro.cc/

[cclauss]

brew home avogadro --> https://avogadro.cc (perhaps this should be https://www.openchemistry.org instead.)

https://avogadro.cc

• Free, Open Source: Easy to install and all source code and documentation is available to modify or extend.

  • Leads to https://github.com/cryos/avogadro instead of https://github.com/openchemistry

    Also, perhaps this repo should be archived to make its status clear.

• https://docs.github.com/en/github/creating-cloning-and-archiving-repositories/archiving-a-github-repository

[ghutchis]

I don't own the repo, so I can't archive it, but I've told @cryos

Clearly a PR is needed to homebrew-cask. At the moment, the better webpage is https://two.avogadro.cc/ - we haven't updated the main site because some users need features not available in avogadrolibs

Thanks for the PR - particularly in avogenerators. Do you have any suggestions for the GitHub actions there?