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csbl-br
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wikiora
Flask app for gene over-representation analysis based on Wikidata.
https://wikiora.sysbio.tools
MIT License
23
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2
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fix: Fix API to return more than only 10 results
#55
lubianat
opened
2 weeks ago
0
feat: Make the change of the cards customizable by the user
#54
lubianat
opened
1 month ago
0
feat: Show gene ratio as a fraction, not as a decimal number
#53
lubianat
opened
1 month ago
0
docs: Add Helder's video tutorial (or other tutorial) to the platform itself
#52
lubianat
opened
1 month ago
0
bug: Everything is nan when running the full list of named genes from hgnc
#51
lubianat
opened
1 month ago
4
feat: Make the tool multilingual (relying on different Wikipedia language versions)
#50
lubianat
opened
1 month ago
0
feat: Make it possible for users to set their background gene lists for proper statistics calculation
#49
lubianat
opened
1 month ago
0
feat: Add background gene list to the downloads
#48
lubianat
opened
1 month ago
0
feat: Add tests for speed with different gene list sizes.
#47
lubianat
opened
1 month ago
0
feat: Add monthly update of gene data and gene libraries
#46
lubianat
closed
1 month ago
0
refact: Add different probabilities for seps
#45
jvfe
closed
1 month ago
1
feat: Implement an advanced mode
#44
lubianat
opened
1 month ago
0
feat: Advanced mode --> let the users pick the method for calculating the p-value (instead of a hypergeometric test)
#43
lubianat
opened
1 month ago
0
feat: Advanced Mode --> allow users to pick the multiple test correction desired
#42
lubianat
opened
1 month ago
0
feat: Validate list of genes properly before running the analysis
#41
lubianat
opened
1 month ago
0
feat: Store in the counter the number of runs/day so we can track usage on time.
#40
lubianat
opened
1 month ago
0
feat: Randomize separator as well
#39
jvfe
closed
1 month ago
1
feat: Make it possible to select the plot color scheme
#38
lubianat
opened
1 month ago
0
feat: Make it easier to create an Wikipedia page for a gene missing it
#37
lubianat
opened
1 month ago
0
feat: Make it possible to download the tables for all gene libraries at once
#36
lubianat
opened
1 month ago
0
user experience: Users ignore the existence of the plots, as they are way below on the display.
#35
lubianat
opened
1 month ago
0
fix: Fix detection of mouse x human genes (inputting mouse genes on "human" analysis leads to blank)
#34
lubianat
opened
1 month ago
0
docs: Clarify the gene sets used on the platform
#33
lubianat
closed
1 month ago
0
feat: Implement a way to store gene lists and share smaller links
#32
lubianat
opened
1 month ago
0
bug: Drop down menu is not working on the mobile interface.
#31
lubianat
closed
1 month ago
0
Update docker-compose.yml
#30
jeevgidd
closed
1 month ago
0
feat: Count lists submitted.
#29
lubianat
closed
1 month ago
0
feat: Add also number of genes in the set to the API output
#28
lubianat
closed
1 month ago
0
feat: Add explanation for the table headers when hovering
#27
lubianat
closed
1 month ago
0
feat: Randomize also the way genes are separated when clicking the randomize button (, ; | tab \n )
#26
lubianat
closed
1 month ago
3
fix: Change table headers and add Gene Ratio (feedback by Fred)
#25
lubianat
closed
1 month ago
0
fix: Preserve form content when clicking the 'back' button
#24
jvfe
closed
1 month ago
3
fix: Make textarea be required when submitting form
#23
jvfe
closed
1 month ago
0
Submitting an empty form leads to a blank page
#22
jvfe
closed
1 month ago
0
refact: Improve mobile layout on results page
#21
jvfe
closed
1 month ago
1
fix: Make it clearer that the methods are constant regardless of "analysis type"
#20
lubianat
opened
1 month ago
0
feat: Preserve form content when clicking the "back" button
#19
lubianat
closed
1 month ago
0
Make WikiORA version appear in the footer.
#18
lubianat
closed
1 month ago
0
delay saying "waiting for csp-report.toolforge.org"
#17
lubianat
opened
1 month ago
0
feat: Add WikiORA version in the output table.
#16
lubianat
closed
1 month ago
0
feat: Add information source (stated in value) to the gene sets and/or outputs
#15
lubianat
opened
1 month ago
0
Add the Benjamini-Hochberg correction in place of the Bonferroni correction.
#14
lubianat
closed
1 month ago
0
Gabriel's suggestions and feedback July 17th 2024
#13
gnrgoldstein
closed
1 month ago
2
Add more plots to the results session.
#12
lubianat
closed
1 month ago
0
feat: Change Bonferroni correction for the Benjamini-Hochberg FDR
#11
lubianat
closed
1 month ago
0
feat: Set up system for periodically updating the gene sets + tagging the releases
#10
lubianat
closed
1 month ago
0
fix: Make it a bit more mobile friendly
#9
lubianat
closed
1 month ago
0
fix: Make site dark-mode friendly
#8
lubianat
closed
1 month ago
2
docs: Add dark mode image
#7
jvfe
closed
1 month ago
3
fix bonferroni correction to actually use the N of all gene sets
#6
lubianat
closed
1 month ago
2
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