cschin / Peregrine

Peregrine: Fast Genome Assembler Using SHIMMER Index
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error in building docker image #12

Open githubrookie1 opened 5 years ago

githubrookie1 commented 5 years ago

When I used your Dockerfile to build docker image. I got the following error or warning messages:

==> WARNING: A newer version of conda exists. <== current version: 4.6.14 latest version: 4.7.5

Please update conda by running

$ conda update -n base -c defaults conda

install_with_conda.sh: line 8: pushd: py: No such file or directory python3: can't open file 'setup.py': [Errno 2] No such file or directory python3: can't open file 'setup.py': [Errno 2] No such file or directory install_with_conda.sh: line 12: popd: directory stack empty Cloning into 'pypeFLOW'...

/opt/conda/envs/peregrine/lib/python3.7/site-packages/setuptools/dist.py:472: UserWarning: Normalizing '2.1.1+git.d63b0e79f5a7b2d370b7de84a890f88271afa476 ' to '2.1.1+git.d63b0e79f5a7b2d370b7de84a890f88271afa476' normalized_version, warning: no files found matching '.html' under directory 'doc' warning: no files found matching '.css' under directory 'doc' warning: no previously-included files matching '~' found anywhere in distribution warning: no previously-included files matching '.pyc' found anywhere in distribution warning: no previously-included files matching '.svn' found anywhere in distribution no previously-included directories found matching 'doc/build' no previously-included directories found matching 'doc/auto_examples' no previously-included directories found matching 'doc/modules' no previously-included directories found matching 'doc/reference/generated' no previously-included directories found matching 'doc/reference/algorithms/generated' no previously-included directories found matching 'doc/reference/classes/generated' no previously-included directories found matching 'doc/reference/readwrite/generated'

install_with_conda.sh: line 17: pushd: py: No such file or directory

install_with_conda.sh: line 17: pushd: py: No such file or directory

cschin commented 5 years ago

what's your docker / python version?