crash in 3-asm: ovlp_to_graph.py

cschin / Peregrine

Peregrine: Fast Genome Assembler Using SHIMMER Index

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Closed rfinkers closed 4 years ago

rfinkers commented 4 years ago

specifically in the script/step: ovlp_to_graph.py I'm running into the following error:

AttributeError: 'DiGraph' object has no attribute 'node'

Googling suggests an issue with networkx? which is at version 2.4 in my conda based install. Any suggestions / which file's are needed for debug?

cschin commented 4 years ago

This is a duplicate from #19. We will track the issue there.