With the release of networkx 2.4 the syntax G.node is removed in favor of G.nodes (https://networkx.github.io/documentation/stable/release/release_2.4.html), and running Peregrine with this version of networkx results in the following error in the assembly stage:
AttributeError: 'DiGraph' object has no attribute 'node'
I was able to fix this by specifically installing networkx==2.2.
I would consider specifying an exact networkx version in setup_pypy.py. Perhaps:
install_requires=["networkx==2.2"],
instead of:
install_requires=["networkx>=2.2"],
I know you recommend using docker to avoid these exact kind of issues, so feel free to close. But I wanted to post for others who might be trying conda installs.
Hi Jason,
With the release of networkx 2.4 the syntax
G.nodeis removed in favor ofG.nodes(https://networkx.github.io/documentation/stable/release/release_2.4.html), and running Peregrine with this version of networkx results in the following error in the assembly stage:AttributeError: 'DiGraph' object has no attribute 'node'I was able to fix this by specifically installing networkx==2.2.
I would consider specifying an exact networkx version in
setup_pypy.py. Perhaps:install_requires=["networkx==2.2"],instead of:install_requires=["networkx>=2.2"],I know you recommend using docker to avoid these exact kind of issues, so feel free to close. But I wanted to post for others who might be trying conda installs.
Thanks! Mitchell