how to produced p_ctg_cns.fa by p_ctg.fa?

cschin / Peregrine

Peregrine: Fast Genome Assembler Using SHIMMER Index

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Closed Ahahaha3 closed 3 years ago

Ahahaha3 commented 3 years ago

if i have a p_ctg.fa, just want to get a p_ctg_cns.fa. how to do that?

cschin commented 3 years ago

There is no standalone tool for this in Peregrine. However, there are a couple of internal module that you can use to achieve this. Please see the function run_cns () in pg_run.py at https://github.com/cschin/Peregrine/blob/008082af23b6d9d3ec45952984d8ed7c53c6b3c5/py/scripts/pg_run.py#L389