provide a default testing case to run the docker image for a small E.…

cschin / Peregrine

Peregrine: Fast Genome Assembler Using SHIMMER Index

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provide a default testing case to run the docker image for a small E.… #6

Closed cschin closed 5 years ago

cschin commented 5 years ago

… Coli assembly

@sifta The is the PR for addressing Issue #5 for now.

on a local docker image build, docker run -it --rm -v $PWD:/wd cschin/peregrine:$TAG test works for now. I will looking DockerHub autobuild results too.

We can move the E. coli reference URL to S3 later.

cschin commented 5 years ago

This branch specific branch build works on both a MacBook Pro and a Linux Desktop too: docker run -it --rm -v $PWD:/wd cschin/peregrine:default_test test

a-khalak commented 5 years ago

@cschin This worked for me and it acts as a test on the user's machine prerequisites are satisfied.