cschin / Peregrine

Peregrine: Fast Genome Assembler Using SHIMMER Index
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Add script to identify un-assembled reads #9

Open cschin opened 5 years ago

cschin commented 5 years ago

Not all reads will be used in the final assembled contigs as some of them are filtered out as repeats or for other reason. It will be desired to output the read ids of these reads that may not be used in the assembly or is inconsistent in the assembly. A user may choose different methods to assemble those reads.