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cschin / peregrine-2021

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Generating a collapsed assembly #8

Open kjenike opened 2 years ago

kjenike commented 2 years ago

Hello! Our group is attempting to generate collapsed assemblies for multiple species. We have a method to do the error correction ourselves and reduce heterozygosity quite a bit. Are there parameters you can suggest?

Thanks so much!

cschin commented 2 years ago

@kjenike can you try to build the binaries from the collapsed_asm branch (https://github.com/cschin/peregrine-2021/tree/collapsed_asm) and test out generating the assemblies from your data?