Implemented Welch's t-Test and also made it as the default t-Test - Githubissues

cschlaffner / PROTzilla2

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Implemented Welch's t-Test and also made it as the default t-Test #439

Closed RogerAK closed 6 months ago

RogerAK commented 6 months ago

Description

fixes #432 implemented Welch's t-test with the option to select Student's t-Test and made Welch's t-Test as the default t-Test.

Changes

In the t-Test method, there is a categorical field that allows the user to select between Welch's and Student's t-Test.
Tests have been added to validate both t-Tests.

Testing

Select either the Standard workflow or Volcano workflow and proceed through the workflow until reaching the t-Test stage.
Run Welch's t-Test and assign a name to the output.
Repeat the process for Student's t-Test, providing a distinct name for its output.
After generating both output data frames, compare them to identify any differences.
Utilize a Volcano plot to visualize the results of both t-Tests.

PR checklist

Development

[x] If necessary, I have updated the documentation (README, docstrings, etc.)
[x] If necessary, I have created / updated tests.

Mergeability

[x] main-branch has been merged into local branch to resolve conflicts
[x] The tests and linter have passed AFTER local merge
[x] The code has been formatted with black

Code review

[x] I have self-reviewed my code.
[x] At least one other developer reviewed and approved the changes

github-actions[bot] commented 6 months ago

Coverage report

Click to see where and how coverage changed

File	Statements	Missing	Coverage	Coverage (new stmts)	Lines missing
protzilla/data_analysis
differential_expression_t_test.py
Project Total

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