WIP 452 import evidence file - Githubissues

cschlaffner / PROTzilla2

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WIP 452 import evidence file #460

Closed JanniRoebbecke closed 3 months ago

JanniRoebbecke commented 6 months ago

Description

fixes #452

Adds the Method evidence_import in Step peptide import in Section importing

Changes

The method evidence_import has been implemented and referenced in workflow_meta and location_mapping
The method test_evidence_import has been added, it tests the evidence_import method and compares the resulting dataframe to a mock dataframe, generated by the Method evidence_df

Testing

add the method to a run and calculate it
you can inspect the resulting dataframe in the debugger or in the userdata, history_dfs (after clicking next)

PR checklist

Development

[x] If necessary, I have updated the documentation (README, docstrings, etc.)
[x] If necessary, I have created / updated tests.

Mergeability

[x] main-branch has been merged into local branch to resolve conflicts
[x] The tests and linter have passed AFTER local merge
[ ] The code has been formatted with black

Code review

[x] I have self-reviewed my code.
[ ] At least one other developer reviewed and approved the changes

github-actions[bot] commented 5 months ago

Coverage report

Click to see where and how coverage changed

File	Statements	Missing	Coverage	Coverage (new stmts)	Lines missing
protzilla/importing
peptide_import.py					63-64
ui
__main__.py
manage.py
Project Total

This report was generated by python-coverage-comment-action

JanniRoebbecke commented 3 months ago

Implemented in PR #496