Remove groups in output

[JanniRoebbecke]

Description

• the 'group1' and 'group2' keys where removed from the output of differential expression tests, because with the new architecture they can be taken from the input of the methods

Changes

• method outputs and tests

Testing

• perform differential expression and volcano plot

PR checklist

Development

• [ ] If necessary, I have updated the documentation (README, docstrings, etc.)
• [ ] If necessary, I have created / updated tests.

Mergeability

• [ ] main-branch has been merged into local branch to resolve conflicts
• [ ] The tests and linter have passed AFTER local merge
• [ ] The code has been formatted with black

Code review

• [ ] I have self-reviewed my code.
• [ ] At least one other developer reviewed and approved the changes

[github-actions[bot]]

Coverage report

Click to see where and how coverage changed

File	Statements	Missing	Coverage	Coverage (new stmts)	Lines missing
protzilla
run.py
run_helper.py
runner.py
steps.py
protzilla/data_analysis
differential_expression_anova.py
differential_expression_linear_model.py
differential_expression_mann_whitney.py					24-48, 68-177
differential_expression_t_test.py
protein_graphs.py
ptm_analysis.py					115-116, 134-136
protzilla/data_integration
di_plots.py
enrichment_analysis_gsea.py
protzilla/data_preprocessing
outlier_detection.py
transformation.py
protzilla/importing
ms_data_import.py					122, 276
peptide_import.py
protzilla/methods
data_analysis.py					161, 163-164, 186-189, 197-204, 228-229, 234-239, 243, 769, 788
data_preprocessing.py
protzilla/utilities
transform_dfs.py
utilities.py
ui/main
settings.py
ui/runs
fields.py
views.py
views_helper.py
ui/runs/forms
data_analysis.py					296, 298-317, 335, 344-365, 1026-1034, 1095, 1101
Project Total

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