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cschlaffner / PoGo

PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided gene annotation.
http://www.sanger.ac.uk/science/tools/pogo
GNU General Public License v3.0
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Support the mismatch in the name #12

Closed ypriverol closed 7 years ago

ypriverol commented 7 years ago

Right now the output file is missing in pogo, the current version of Pogo uses the file name of the input as a prefix for all the output files. However, most of the users will run the same tool allowing 1 or 2 mismatches to do the research. I will suggest that we include in the name of the output file the number of mismatches like _MM1 or _MM2. This will allow running the multiple analysis in the same input file.

cschlaffner commented 7 years ago

The latest commit now supports this. File names are marked with "_1MM", "_2MM-(1in5)", and "_2MM" when PoGo options for 1 mismatch, 2 mismatches (1 in 5), or 2 mismatches selected for execution, respectively.

ypriverol commented 7 years ago

Thanks @cschlaffner for implementing this.