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cschlaffner / PoGo

PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided gene annotation.
http://www.sanger.ac.uk/science/tools/pogo
GNU General Public License v3.0
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BigWid for quantitation #14

Open ypriverol opened 6 years ago

ypriverol commented 6 years ago

@cschlaffner :

What is the possibility to implement the quantitation export into a bigwid https://genome.ucsc.edu/goldenpath/help/wiggle.html

cschlaffner commented 6 years ago

Hi @yasset:

The structure of the WIG output would require substantial changes to the core data structure of PoGo. Unfortunately, at this time I am not able to change the data structure to accommodate the WIG format.

As with the Bed and bigBed formats WIG needs to be turned into bigWig. I suggest using the conversion tool from UCSC for that.

ypriverol commented 6 years ago

We have a way to turn into bigwiG from wig but we need to be able to generate the format. (Wig)