Pogo Peptides output devided on three main sets

cschlaffner / PoGo

PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided gene annotation.

http://www.sanger.ac.uk/science/tools/pogo

GNU General Public License v3.0

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Pogo Peptides output devided on three main sets #4

Closed ypriverol closed 7 years ago

ypriverol commented 7 years ago

@cschlaffner The pogo outputs should be devided in three main tracks:

ptm.bed Modified peptides wich contains all the modified peptides including the colors and for the peptides with modifications but not biologically relevant, then it should be black color and only the sequences + UNMOD IDs.
all.bed All petides should included in this track: Modified and un-Modified peptides.
non_ptm.bed all non-modified peptides variants.

cschlaffner commented 7 years ago

Has been added. Peptides without PTMs are returned in the *_no-ptm.bed output file. They are marked through grey colour.