If a version of the manuscript already exists under writing/ the rendering process will fail as the output file glob * for the render process excludes any input files (as expected). This can happen if a user opts for rendering outside the pipeline and later re-runs the pipeline including the rendering process.
This can be fixed e.g. by specifying the output file name(s) explicitly rather than via a glob. Final report and/or manuscript file name could be defined in nextflow.config.
If a version of the manuscript already exists under
writing/the rendering process will fail as the output file glob*for the render process excludes any input files (as expected). This can happen if a user opts for rendering outside the pipeline and later re-runs the pipeline including the rendering process.This can be fixed e.g. by specifying the output file name(s) explicitly rather than via a glob. Final report and/or manuscript file name could be defined in
nextflow.config.