Further modularise - Githubissues

csiro-crop-informatics / repset

Reproducible evaluation of short read mappers

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Further modularise #25

Closed rsuchecki closed 4 years ago

rsuchecki commented 5 years ago

Until NF [modules] (https://github.com/nextflow-io/nextflow/issues/984) are rolled out the pipeline should be made more manageable by moving some of the R and groovy scripts from main.nf to either

standalone scripts under bin/
templates e.g. under templates/R, templates/groovy

This could go hand-in-hand with finalizing #9 by streamlining how results are summarized (groovy) and presented (R)

rsuchecki commented 4 years ago

NXF DSL2 is available but I cannot see it being needed for the current workflow.
Various changes since opening the issue mean there is very little to move out from the script blocks