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csiro-crop-informatics / repset

Reproducible evaluation of short read mappers
GNU General Public License v3.0
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Incorporate DNA alignment #9

Closed rsuchecki closed 5 years ago

rsuchecki commented 5 years ago

Extract core of what was done for DNA-alignment evaluation in https://github.com/csiro-crop-informatics/biokanga_align_paper and incorporate as a spearate path feeding into rendered publication in this pipeline.

rsuchecki commented 5 years ago

Use wheat as input data set. Possibly single chromosome-group by default.

rsuchecki commented 5 years ago

Also add Dockerfiles for all required containers and configure automated builds

rsuchecki commented 5 years ago

framework added, need PE align templates possibly also SE

rsuchecki commented 5 years ago

Add real DNA alignment - basic stats only

rsuchecki commented 5 years ago

Better covered in #28 #29