When I try to run DataCrawler.py on my recently downloaded 23andme genome, I get this error.
Traceback (most recent call last):
File "/home/danielmcnally/github/OSGenome/SNPedia/DataCrawler.py", line 168, in <module>
dfCrawl = SNPCrawl(rsids=rsid)
File "/home/danielmcnally/github/OSGenome/SNPedia/DataCrawler.py", line 35, in __init__
self.initcrawl(rsids)
File "/home/danielmcnally/github/OSGenome/SNPedia/DataCrawler.py", line 43, in initcrawl
self.grabTable(rsid)
File "/home/danielmcnally/github/OSGenome/SNPedia/DataCrawler.py", line 63, in grabTable
bs = BeautifulSoup(html, "html.parser")
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/__init__.py", line 228, in __init__
self._feed()
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/__init__.py", line 289, in _feed
self.builder.feed(self.markup)
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/builder/_htmlparser.py", line 167, in feed
parser.feed(markup)
File "/usr/lib/python3.10/html/parser.py", line 110, in feed
self.goahead(0)
File "/usr/lib/python3.10/html/parser.py", line 178, in goahead
k = self.parse_html_declaration(i)
File "/usr/lib/python3.10/html/parser.py", line 269, in parse_html_declaration
self.handle_decl(rawdata[i+2:gtpos])
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/builder/_htmlparser.py", line 112, in handle_decl
self.soup.endData(Doctype)
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/__init__.py", line 365, in endData
self.object_was_parsed(o)
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/__init__.py", line 370, in object_was_parsed
previous_element = most_recent_element or self._most_recent_element
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/element.py", line 1040, in __getattr__
return self.find(tag)
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/element.py", line 1278, in find
l = self.find_all(name, attrs, recursive, text, 1, **kwargs)
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/element.py", line 1299, in find_all
return self._find_all(name, attrs, text, limit, generator, **kwargs)
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/element.py", line 528, in _find_all
strainer = SoupStrainer(name, attrs, text, **kwargs)
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/element.py", line 1596, in __init__
self.text = self._normalize_search_value(text)
File "/home/danielmcnally/github/OSGenome/venv/lib/python3.10/site-packages/bs4/element.py", line 1601, in _normalize_search_value
if (isinstance(value, str) or isinstance(value, collections.Callable) or hasattr(value, 'match')
AttributeError: module 'collections' has no attribute 'Callable'
When I try to run
DataCrawler.py
on my recently downloaded 23andme genome, I get this error.