Time loading forward index: 00:00:00
I am attempting to run EMIRGE and receive the following error (listed below). I am operating USEARCH v 5.2.32 (64-bit to increase the RAM). I am running EMIRGE in an empty directory. Does anyone know what might be happening? Thanks.
Time loading mirror index: 00:00:00
[samopen] SAM header is present: 21 sequences.
Seeded quality full-index search: 00:12:47
reads processed: 10010002
reads with at least one reported alignment: 9956 (0.10%)
reads that failed to align: 10000046 (99.90%)
Reported 9956 alignments to 1 output stream(s)
Time searching: 00:12:47
Overall time: 00:12:47
Beginning initialization at Wed Apr 10 10:31:21 2013...
Reading bam file /home/localuser/Desktop/Emirge_runs/emirge_output/initial_mapping/initial_bowtie_mapping.PE.bam at Wed Apr 10 10:31:21 2013...
Segmentation fault
Time loading forward index: 00:00:00 I am attempting to run EMIRGE and receive the following error (listed below). I am operating USEARCH v 5.2.32 (64-bit to increase the RAM). I am running EMIRGE in an empty directory. Does anyone know what might be happening? Thanks.
Time loading mirror index: 00:00:00 [samopen] SAM header is present: 21 sequences. Seeded quality full-index search: 00:12:47
reads processed: 10010002
reads with at least one reported alignment: 9956 (0.10%)
reads that failed to align: 10000046 (99.90%)
Reported 9956 alignments to 1 output stream(s) Time searching: 00:12:47 Overall time: 00:12:47 Beginning initialization at Wed Apr 10 10:31:21 2013... Reading bam file /home/localuser/Desktop/Emirge_runs/emirge_output/initial_mapping/initial_bowtie_mapping.PE.bam at Wed Apr 10 10:31:21 2013... Segmentation fault