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csmiller / EMIRGE

EMIRGE reconstructs full length ribosomal genes from short read sequencing data.
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EMIRGE presets and environmental variable defaults #7

Open csmiller opened 12 years ago

csmiller commented 12 years ago

EMIRGE is not always easy to use. Two suggestions to improve this:

  1. Have several "presets" options that set the individual options for common use cases.
  2. Have EMIRGE look for a handful of $EMIRGE_* in the environment, so that, for example, you don't have to specify -f and -b for the SSU candidate database on the command line every time.