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cstoeckert / iterativeWGCNA

Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
GNU General Public License v2.0
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iterativeWGCNA fails when passing maxBlockSize within --wgcnaParameters #1

Closed jpcartailler closed 8 years ago

jpcartailler commented 8 years ago

As Emily pointed out, the iwgcna.log indicates that the parameter is being handled as a string and not an integer.

jpcartailler commented 8 years ago

In original iwgcna.log: INFO: Running WGCNA with the following params: INFO: {'minModuleSize': 20, 'minCoreKME': 0.8, 'minKMEtoStay': 0.8, 'reassignThreshold': 0.05, 'maxBlockSize': '20000', 'numericLabels' : True}

In revised iwgna.log: INFO: Running WGCNA with the following params: INFO: {'minModuleSize': 20, 'minCoreKME': 0.8, 'minKMEtoStay': 0.8, 'reassignThreshold': 0.05, 'maxBlockSize': 20000, 'numericLabels': True}