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csu-hmc / perturbed-data-paper

A paper on an elaborate gait data set.
https://peerj.com/articles/918/
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Couple of Very Minor Items In Directions #84

Closed humphreysb closed 9 years ago

humphreysb commented 9 years ago

Sorry - have not been able to get through full build yet because of an issue with my Anaconda setup. But a couple of very minor items that I will pass along that may or may not need to be included in the directions:

I was working from fresh Latex Install so I had to: 1) Had to run: sudo apt-get install texlive-humanities when make in Basic LaTeX Build Instructions 2) Had to run: sudo apt-get install texlive-science when make in Basic LaTeX Build Instructions

My conda install is borked, so I had to fresh install it and that meant in install dependencies: 1) Instead of bash Anaconda-2.1.0-Linux-x86.sh, I used: bash Anaconda-2.1.0-Linux-x86_64.sh 2) I also had to add conda to my path: export PATH=~/anaconda/bin:$PATH

In the paper, you mention Panda, but never introduce it. Of course it does show up in the build instructions, but in the paper it is mentioned, but not introduced.

moorepants commented 9 years ago

I was working from fresh Latex Install so I had to:

  1. Had to run: sudo apt-get install texlive-humanities when make in Basic LaTeX Build Instructions
  2. Had to run: sudo apt-get install texlive-science when make in Basic LaTeX Build Instructions

I'll add in the Ubuntu latex install instructions. We do use a couple of odd packages.

1) Instead of bash Anaconda-2.1.0-Linux-x86.sh, I used: bash Anaconda-2.1.0-Linux-x86_64.sh

The difference in the two is whether you want a 32bit install or a 64 bit. I just have that as an example in the instructions instead of listing all possible choices. I'll note that you may need to choose a different download depending on the installation.

2) I also had to add conda to my path: export PATH=~/anaconda/bin:$PATH

The installer will add this to your .bashrc automatically if you don't decline that. In general, you shouldn't have to do that.

In the paper, you mention Panda, but never introduce it. Of course it does show up in the build instructions, but in the paper it is mentioned, but not introduced.

I mention in the paper that the software depends on the SciPy Stack. There are numerous packages in the SciPy Stack and I don't really want to go into the details. I can cite Pandas since I mention the data types from it specifically.