Validate parsing against all UCSC MAF files

csw / bioruby-maf

MAF parser for BioRuby

MIT License

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Validate parsing against all UCSC MAF files #100

Closed csw closed 2 years ago

csw commented 12 years ago

Need to download, parse, and index all UCSC MAF files to ensure parser robustness.

csw commented 12 years ago

Having difficulties already with http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/maf/upstream1000.maf.gz.

csw commented 12 years ago

All except upstream*.maf.gz can be parsed and indexed now. Only outstanding issue is #102, inconsistent reference sequences in upstream* preventing indexing.